Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq34 262 3e-66 >seq34 Length=16008657 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 3353978 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGTGCCAGATACTGTGCTGAGTGCAATAGG 3354037 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 3354038 CTGCATCCTGCAGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 3354097 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 3354098 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 3354140 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 3354217 CAGAGTGGGCTGGATGCCAACGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 3354276 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| | |||||||| ||||| ||||| |||| Sbjct 3354277 ACATCTCCTTTGGTTCTCGGATCCCAGGCGCCAG 3354310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210277152960