Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_030690.1 Length=8930 Score E Sequences producing significant alignments: (Bits) Value seq2 80.6 2e-11 >seq2 Length=87689862 Score = 80.6 bits (88), Expect = 2e-11 Identities = 199/293 (68%), Gaps = 13/293 (4%) Strand=Plus/Minus Query 463 TTACTGATTGGTGTGGTGATTGGTTCTTCTGCAAAAATC--AAGGCTGGCGCTGAACAGA 520 ||| ||||||| | || ||||| || || | ||||||| ||| ||| | ||||| | Sbjct 35767536 TTAATGATTGGGATAGTAATTGGATCCTCAGAAAAAATCTGAAG--TGGATCAGAACAAA 35767479 Query 521 TTAAAAAGAGATTCAAAACATTAATGGCATCACTCAACAGACCCTCTCATGGAGAAACTG 580 | || |||| ||||| || | |||| |||| |||| | |||||||| || | Sbjct 35767478 TCAAGTAGAGGTTCAATACTCTCATGGTTACACTGAACAAGCAAGGGCATGGAGACACAG 35767419 Query 581 CCACACTTCTTCAGATGTTTA--ATCCTCATGAAGCTATCGACTGGATTAATGGTCAACC 638 || | | | | | |||| |||| || ||| | ||| || | ||| ||||| Sbjct 35767418 CCTC--TGCAATAAACCTTTACCATCCCAGTGCTGCTGTTGACCGGCTCAATTCCCAACC 35767361 Query 639 ATGGGTTGG-ATCCTTAGTCTTATCTT-TAATTACTACAGACTTTGAATCACCCGGGAAA 696 ||||||||| | || | ||| ||| | || | || | ||||| || | |||||| Sbjct 35767360 ATGGGTTGGCAGTCTCATAGTTAGCTTGTTAT--CCACCAAGTTTGATTCCCTTGGGAAA 35767303 Query 697 GAATTCATGGATCAGATCAAGCTGGTTGCCAGTTATGCACAAATGACAACATA 749 || || ||||| ||||||| | ||||||||| | ||| | |||||| ||||| Sbjct 35767302 GAGTTGATGGACCAGATCAGGATGGTTGCCAACTGTGC-CCAATGACTACATA 35767251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28460146824640