Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq11 387 1e-103 seq49 262 3e-66 >seq11 Length=31633827 Score = 387 bits (428), Expect = 1e-103 Identities = 265/299 (89%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| | | ||||||||||||||||||||||| |||| Sbjct 61537 AAGAGCCAATGAATACTATGATGTGCAGCTGCTGCCAGGGAAAGCATAGGAGGTTAGAAA 61596 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 61597 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGACTGTGTCCTGCTG 61656 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 | ||||| |||||| ||||||||| ||| |||||||||||||| | |||||||||||| | Sbjct 61657 AAGAAGGAGACTTTGGGGCAGAGTAAAGGATGTTGGGCCTCAAGACCACCTACTTTGCAC 61716 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 |||||||||||||| ||||||| ||||||||||||||| |||| |||| |||||||||| Sbjct 61717 TGATGGATGGAAAGTTGTATGACATCACAGAGTGGGCTCGATGTCAGCAAGTGGGAATCT 61776 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 |||||||||| || |||| ||| || ||| || |||||||||| ||||| ||||| ||| Sbjct 61777 CCCCAGATACTCATAGAGACCCCTACCACGTCTCATTTGGTTCTCGGATACCAGGCACC 61835 >seq49 Length=11612304 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361650 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 361591 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||| Sbjct 361590 CTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGTATGTGGGGCCTCAAGATC 361531 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 361530 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 361488 Score = 122 bits (134), Expect = 7e-24 Identities = 96/114 (84%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| ||||| || ||||||||||||||||| || | |||||| |||| Sbjct 361413 CAGAGTGGGCTGGATGTCAGCGAGTAGGAATCTCCCCAGATACTCATAAAGTCCCCTATC 361354 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 ||||| |||||||||| ||||| ||||| ||||| | | || ||||| | ||| Sbjct 361353 ACATCTCATTTGGTTCTCGGATACCAGGCACCAGTGGGC-GACAGAGGTAGGTG 361301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40208128819336