Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq6 271 6e-69 >seq6 Length=84719076 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 73587072 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAAG 73587013 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 73587012 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 73586953 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||||||||||||||||| |||||||| ||||||| Sbjct 73586952 ACCTACTTTGCGCTGATGGATGGAAAAGTGTATGACATCACAG 73586910 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||| Sbjct 73586830 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACTCACAAAGTTCCCTATC 73586771 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| | |||||||| ||||| ||||| ||||| Sbjct 73586770 ACATCTCCTTTGGTTCTCGGATTCCAGGCACCAG 73586737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40206840452488