Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq8552 114 7e-23 seq8365 104 1e-19 >seq8552 Length=41063 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 22798 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 22857 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 22858 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 22884 >seq8365 Length=226949 Score = 104 bits (114), Expect = 1e-19 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||| || |||||||||||| Sbjct 51467 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGATCATGCTCCACCTCC 51526 Query 897 CCGACGCGGTCGGG 910 ||| ||||| |||| Sbjct 51527 CCGGCGCGG-CGGG 51539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860515689226