Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq2016 268 7e-68 >seq2016 Length=341261 Score = 268 bits (296), Expect = 7e-68 Identities = 157/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 124257 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAAG 124316 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 124317 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 124376 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||||||||||||||||| |||||||| ||||||| Sbjct 124377 ACCTACTTTGCGCTGATGGATGGAAAAGTGTATGACATCACAG 124419 Score = 118 bits (130), Expect = 9e-23 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||| |||| ||| || | || Sbjct 124499 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACTCACAAAGTTCCCTATC 124558 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||| |||||||| ||||| || Sbjct 124559 ACATCTCCTTTGGTTCTCGGATTCC 124583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40094435624796