Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq652 228 7e-56 >seq652 Length=1363665 Score = 228 bits (252), Expect = 7e-56 Identities = 149/164 (91%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||| |||||||||||||| |||||||||| ||||||||| || ||||| ||||| || Sbjct 1127635 TAGGAGATTTGAAATGGACCGTGAACCTAAGAATGCCAGATATTGCGCTGAATGTAACAG 1127694 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||||||||||||||||||||||||||| || |||||||| || || || Sbjct 1127695 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCCAGTATGTTGGGTCTTAAGAT 1127754 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||| ||||||||||||||||||||||| || |||| Sbjct 1127755 CACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATTACAG 1127798 Score = 122 bits (134), Expect = 7e-24 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||| ||||||||||||||||||||||| |||||||| || | || Sbjct 1128085 CAGAGTGGGCTGGATGCCAACGTGTGGGAATCTCCCCAGATACTCACAGAGTACCCTATC 1128144 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||| || Sbjct 1128145 ACATCTCATTTGGTTCTCGGATTCC 1128169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115780920404