Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq652 228 7e-56 >seq652 Length=1363665 Score = 228 bits (252), Expect = 7e-56 Identities = 149/164 (91%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||| |||||||||||||| |||||||||| ||||||||| || ||||| ||||| || Sbjct 1127635 TAGGAGATTTGAAATGGACCGTGAACCTAAGAATGCCAGATATTGCGCTGAATGTAACAG 1127694 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||||||||||||||||||||||||||||||||| || |||||||| || || || Sbjct 1127695 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCCAGTATGTTGGGTCTTAAGAT 1127754 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||| ||||||||||||||||||||||| || |||| Sbjct 1127755 CACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATTACAG 1127798 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||| Sbjct 1128085 CAGAGTGGGCTGGATGCCAACGTGTGGGAATCTCCCCAGATACTCACAGAGTACCCTATC 1128144 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||||| ||||| ||||| Sbjct 1128145 ACATCTCATTTGGTTCTCGGATTCCAGGCACCAG 1128178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40208574862072