Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-18 seq59 96.9 2e-17 seq538 95.1 7e-17 seq404 91.5 8e-16 seq45 75.2 6e-11 >seq2 Length=16010500 Score = 100 bits (110), Expect = 2e-18 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||| Sbjct 8896951 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTACGCTCGTGCTCTACCTCC 8897010 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 | || | || |||| || || |||||||||| Sbjct 8897011 CTGATG-GGGCGGG-CG-AG-ACGGGCCGGT 8897037 >seq59 Length=6325068 Score = 96.9 bits (106), Expect = 2e-17 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||| Sbjct 306636 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACATACGCTCGTGCTCCATCTCC 306695 Query 897 CCGACGCGGTCGGGT 911 || | | || ||||| Sbjct 306696 CCTATG-GGGCGGGT 306709 >seq538 Length=1665627 Score = 95.1 bits (104), Expect = 7e-17 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct 335874 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAACACATACGCTCGTGCTCCACCTCC 335933 >seq404 Length=2183755 Score = 91.5 bits (100), Expect = 8e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| Sbjct 1718116 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCTTAACAGATATGCTCGTGCTCCACCTCC 1718057 Query 897 CCGAC 901 | ||| Sbjct 1718056 CAGAC 1718052 >seq45 Length=6757098 Score = 75.2 bits (82), Expect = 6e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||| ||| || || ||||||||||||||||||| | |||||| ||||| ||||| Sbjct 4620255 CTGCCCACGCACAGCTCGCCATCTTTCGGGTCCTAACACGCACGCTCGCGCTCCGCCTCC 4620314 Query 897 CCGACG 902 |||||| Sbjct 4620315 CCGACG 4620320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860628799894