Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 2e-18
seq59 96.9 2e-17
seq538 95.1 7e-17
seq404 91.5 8e-16
seq45 75.2 6e-11
>seq2
Length=16010500
Score = 100 bits (110), Expect = 2e-18
Identities = 80/91 (88%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||
Sbjct 8896951 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTACGCTCGTGCTCTACCTCC 8897010
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927
| || | || |||| || || ||||||||||
Sbjct 8897011 CTGATG-GGGCGGG-CG-AG-ACGGGCCGGT 8897037
>seq59
Length=6325068
Score = 96.9 bits (106), Expect = 2e-17
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||
Sbjct 306636 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACATACGCTCGTGCTCCATCTCC 306695
Query 897 CCGACGCGGTCGGGT 911
|| | | || |||||
Sbjct 306696 CCTATG-GGGCGGGT 306709
>seq538
Length=1665627
Score = 95.1 bits (104), Expect = 7e-17
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 335874 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAACACATACGCTCGTGCTCCACCTCC 335933
>seq404
Length=2183755
Score = 91.5 bits (100), Expect = 8e-16
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 1718116 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCTTAACAGATATGCTCGTGCTCCACCTCC 1718057
Query 897 CCGAC 901
| |||
Sbjct 1718056 CAGAC 1718052
>seq45
Length=6757098
Score = 75.2 bits (82), Expect = 6e-11
Identities = 56/66 (85%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||| ||| || || ||||||||||||||||||| | |||||| ||||| |||||
Sbjct 4620255 CTGCCCACGCACAGCTCGCCATCTTTCGGGTCCTAACACGCACGCTCGCGCTCCGCCTCC 4620314
Query 897 CCGACG 902
||||||
Sbjct 4620315 CCGACG 4620320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2860628799894
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |