Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq17851 414 8e-112
seq15008 408 3e-110
seq14198 408 3e-110
seq4477 271 6e-69
>seq17851
Length=34735
Score = 414 bits (458), Expect = 8e-112
Identities = 255/272 (94%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 27017 ATGTGTGGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAGGAGT 27076
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 27077 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCC 27136
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 27137 AAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGAGAGAAAGGTGTAT 27196
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 27197 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCGCAGAGCC 27256
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|| | ||||||||||||||||||||||| |||
Sbjct 27257 CCCTATCACATCTCATTTGGTTCACGGAGGCC 27288
>seq15008
Length=49186
Score = 408 bits (452), Expect = 3e-110
Identities = 256/273 (94%), Gaps = 2/273 (1%)
Strand=Plus/Minus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGC-ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5052
|||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||
Sbjct 1926 ATGTGCAGCCGATGCCAGAGAAAGCCATAGGACGTTTGAAATGGACCGGGAACCTAAGAG 1867
Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1866 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGAATTTTGGGC 1807
Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172
||||| ||||||||||||||||| || ||||||||| |||||||||| |||||||||||
Sbjct 1806 TGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CGCTGATGGAGGGAAAGGTGTA 1748
Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232
||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1747 TGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCCAGATACTCACAGAGT 1688
Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
||| | |||||||||||||||||||||||||||
Sbjct 1687 CCCCTATCACATCTCATTTGGTTCACGGATGCC 1655
>seq14198
Length=54544
Score = 408 bits (452), Expect = 3e-110
Identities = 255/273 (93%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 53529 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGGCCGGGAACCTGAGAGT 53470
Query 5054 GCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 53469 GCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGC 53410
Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172
|||||| |||||| ||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 53409 AGAGTCAAGCATGCTGGACCTCAAGATCACCTACTTTGCTCTGATGGATGGAAAGGTGTA 53350
Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232
||| |||||||||||||| |||||||||| ||||||||||||||||||||| | ||||||
Sbjct 53349 TGACATCACAGAGTGGGCGGGATGCCAGCTTGTGGGAATCTCCCCAGATACACGCAGAGT 53290
Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
||| | |||||||||||||||||| |||||||
Sbjct 53289 CCCCTACCACATCTCATTTGGTTCATGGATGCC 53257
>seq4477
Length=175918
Score = 271 bits (300), Expect = 6e-69
Identities = 158/163 (97%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 172193 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 172134
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 172133 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 172074
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 172073 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 172031
Score = 145 bits (160), Expect = 6e-31
Identities = 83/85 (98%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 171954 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 171895
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
|||||||||||||||||||||||||
Sbjct 171894 ACATCTCATTTGGTTCACGGATGCC 171870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40092582455604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |