Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq17851 414 8e-112 seq15008 408 3e-110 seq14198 408 3e-110 seq4477 271 6e-69 >seq17851 Length=34735 Score = 414 bits (458), Expect = 8e-112 Identities = 255/272 (94%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 27017 ATGTGTGGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAGGAGT 27076 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 27077 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCC 27136 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 27137 AAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGAGAGAAAGGTGTAT 27196 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 27197 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCGCAGAGCC 27256 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||||||||||| ||| Sbjct 27257 CCCTATCACATCTCATTTGGTTCACGGAGGCC 27288 >seq15008 Length=49186 Score = 408 bits (452), Expect = 3e-110 Identities = 256/273 (94%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGC-ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5052 |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| Sbjct 1926 ATGTGCAGCCGATGCCAGAGAAAGCCATAGGACGTTTGAAATGGACCGGGAACCTAAGAG 1867 Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1866 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGAATTTTGGGC 1807 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 ||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||||| Sbjct 1806 TGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CGCTGATGGAGGGAAAGGTGTA 1748 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1747 TGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCCAGATACTCACAGAGT 1688 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | ||||||||||||||||||||||||||| Sbjct 1687 CCCCTATCACATCTCATTTGGTTCACGGATGCC 1655 >seq14198 Length=54544 Score = 408 bits (452), Expect = 3e-110 Identities = 255/273 (93%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 53529 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGGCCGGGAACCTGAGAGT 53470 Query 5054 GCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 53469 GCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGC 53410 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 |||||| |||||| ||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct 53409 AGAGTCAAGCATGCTGGACCTCAAGATCACCTACTTTGCTCTGATGGATGGAAAGGTGTA 53350 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| |||||||||||||| |||||||||| ||||||||||||||||||||| | |||||| Sbjct 53349 TGACATCACAGAGTGGGCGGGATGCCAGCTTGTGGGAATCTCCCCAGATACACGCAGAGT 53290 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | |||||||||||||||||| ||||||| Sbjct 53289 CCCCTACCACATCTCATTTGGTTCATGGATGCC 53257 >seq4477 Length=175918 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 172193 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 172134 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 172133 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 172074 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 172073 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 172031 Score = 145 bits (160), Expect = 6e-31 Identities = 83/85 (98%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 171954 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 171895 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||||||||||| Sbjct 171894 ACATCTCATTTGGTTCACGGATGCC 171870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40092582455604