Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq17851 448 4e-122
seq15008 443 2e-120
seq14198 443 2e-120
seq4477 277 1e-70
>seq17851
Length=34735
Score = 448 bits (496), Expect = 4e-122
Identities = 280/301 (93%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 26997 AAGAAGCAATGAATACTATGATGTGTGGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 27056
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 27057 TGGACCGGGAACCTAGGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG 27116
Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138
||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 27117 AGGAAGGAGACTTTTGGGCCAAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGC 27176
Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 27177 TGATGGAGAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 27236
Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258
|||||||||||| ||||| ||| ||||||||| ||||||||||||||| |||||| ||||
Sbjct 27237 CCCCAGATACCCGCAGAGCCCCCTATCACATCTCATTTGGTTCACGGAGGCCAGGCACCA 27296
Query 5259 G 5259
|
Sbjct 27297 G 27297
>seq15008
Length=49186
Score = 443 bits (490), Expect = 2e-120
Identities = 281/302 (93%), Gaps = 2/302 (1%)
Strand=Plus/Minus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGC-ATAGGAGGTTTGAA 5017
|||| |||||||||| |||||||||| |||||||||| |||||| |||||| |||||||
Sbjct 1946 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGAGAAAGCCATAGGACGTTTGAA 1887
Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 1827
Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137
|||||||| || |||||||| ||||||||||||||||||||||| || ||||||||| ||
Sbjct 1826 GAGGAAGGAGAATTTTGGGCTGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CG 1768
Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197
|||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 1767 CTGATGGAGGGAAAGGTGTATGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATC 1708
Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257
||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1707 TCCCCAGATACTCACAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACC 1648
Query 5258 AG 5259
||
Sbjct 1647 AG 1646
>seq14198
Length=54544
Score = 443 bits (490), Expect = 2e-120
Identities = 280/302 (93%), Gaps = 1/302 (0%)
Strand=Plus/Minus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 53549 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 53490
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCT 5077
||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 53489 TGGGCCGGGAACCTGAGAGTGCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCT 53430
Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137
|||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 53429 GAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTGGACCTCAAGATCACCTACTTTGCT 53370
Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197
||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct 53369 CTGATGGATGGAAAGGTGTATGACATCACAGAGTGGGCGGGATGCCAGCTTGTGGGAATC 53310
Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257
||||||||||| | ||||||||| || |||||| ||||||||||| |||||||||| |||
Sbjct 53309 TCCCCAGATACACGCAGAGTCCCCTACCACATCTCATTTGGTTCATGGATGCCAGGCACC 53250
Query 5258 AG 5259
||
Sbjct 53249 AG 53248
>seq4477
Length=175918
Score = 277 bits (306), Expect = 1e-70
Identities = 159/163 (98%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 172193 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 172134
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 172133 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 172074
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 172073 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 172031
Score = 156 bits (172), Expect = 3e-34
Identities = 91/94 (97%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 171954 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 171895
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
||||| |||||||||||||||||||||| |||||
Sbjct 171894 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 171861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40185322735672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |