Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq17851 448 4e-122 seq15008 443 2e-120 seq14198 443 2e-120 seq4477 277 1e-70 >seq17851 Length=34735 Score = 448 bits (496), Expect = 4e-122 Identities = 280/301 (93%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 26997 AAGAAGCAATGAATACTATGATGTGTGGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 27056 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 27057 TGGACCGGGAACCTAGGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG 27116 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 27117 AGGAAGGAGACTTTTGGGCCAAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGC 27176 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 27177 TGATGGAGAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 27236 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||| ||||| ||| ||||||||| ||||||||||||||| |||||| |||| Sbjct 27237 CCCCAGATACCCGCAGAGCCCCCTATCACATCTCATTTGGTTCACGGAGGCCAGGCACCA 27296 Query 5259 G 5259 | Sbjct 27297 G 27297 >seq15008 Length=49186 Score = 443 bits (490), Expect = 2e-120 Identities = 281/302 (93%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGC-ATAGGAGGTTTGAA 5017 |||| |||||||||| |||||||||| |||||||||| |||||| |||||| ||||||| Sbjct 1946 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGAGAAAGCCATAGGACGTTTGAA 1887 Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1886 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 1827 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| || |||||||| ||||||||||||||||||||||| || ||||||||| || Sbjct 1826 GAGGAAGGAGAATTTTGGGCTGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CG 1768 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 |||||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||| Sbjct 1767 CTGATGGAGGGAAAGGTGTATGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATC 1708 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 1707 TCCCCAGATACTCACAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACC 1648 Query 5258 AG 5259 || Sbjct 1647 AG 1646 >seq14198 Length=54544 Score = 443 bits (490), Expect = 2e-120 Identities = 280/302 (93%), Gaps = 1/302 (0%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 53549 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 53490 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCT 5077 ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 53489 TGGGCCGGGAACCTGAGAGTGCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCT 53430 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| |||||||||||||||||||||||| ||| |||||| |||||||||||||| Sbjct 53429 GAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTGGACCTCAAGATCACCTACTTTGCT 53370 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 ||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| Sbjct 53369 CTGATGGATGGAAAGGTGTATGACATCACAGAGTGGGCGGGATGCCAGCTTGTGGGAATC 53310 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||| | ||||||||| || |||||| ||||||||||| |||||||||| ||| Sbjct 53309 TCCCCAGATACACGCAGAGTCCCCTACCACATCTCATTTGGTTCATGGATGCCAGGCACC 53250 Query 5258 AG 5259 || Sbjct 53249 AG 53248 >seq4477 Length=175918 Score = 277 bits (306), Expect = 1e-70 Identities = 159/163 (98%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 172193 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 172134 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 172133 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 172074 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 172073 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 172031 Score = 156 bits (172), Expect = 3e-34 Identities = 91/94 (97%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 171954 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 171895 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||||||||||||||| ||||| Sbjct 171894 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 171861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40185322735672