Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq121991 113 3e-22 seq198 87.8 1e-14 seq11191 86.0 4e-14 >seq121991 Length=219 Score = 113 bits (124), Expect = 3e-22 Identities = 70/74 (95%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 82 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 23 Query 897 CCGACGCGGTCGGG 910 ||| ||||| |||| Sbjct 22 CCGGCGCGG-CGGG 10 >seq198 Length=88056 Score = 87.8 bits (96), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||||| | || || |||||||||||| Sbjct 81258 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAACACGAGCATTCATGCTCCACCTCC 81199 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||| | |||| || || ||||||| || Sbjct 81198 CCGGCGCAG-CGGG-CG-AG-ACGGGCCAGT 81172 >seq11191 Length=404916 Score = 86.0 bits (94), Expect = 4e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCT 888 ||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 95061 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCT 95112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2845660252146