Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq552 376 2e-100 seq549 264 9e-67 >seq552 Length=1099332 Score = 376 bits (416), Expect = 2e-100 Identities = 247/272 (91%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| | Sbjct 1015653 ATGTGCAGCCGATGCTAAGGAAAGCATAGGAGGTTTGAAATGGACCAGGAACCTAAGAAT 1015594 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||||||||||| |||| |||| | ||||||||| Sbjct 1015593 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCCACTGAAGAAGAT---TTTTGGGCA 1015537 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1015536 GAGTCAAGCATGTTGGGCCTGAAGATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 1015477 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | ||||||||||||||| |||| |||||||||| |||||| |||||||||||||||||| Sbjct 1015476 GCCATCACAGAGTGGGCTAGATGTCAGCGTGTGGAAATCTCTCCAGATACCCACAGAGTC 1015417 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | |||||||||||||||||| ||||| || Sbjct 1015416 CCCTATCACATCTCATTTGGTTCTCGGATCCC 1015385 >seq549 Length=1240072 Score = 264 bits (292), Expect = 9e-67 Identities = 157/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413664 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 413605 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| || || Sbjct 413604 GCTGCATCCCGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTGAAGAT 413545 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 413544 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 413501 Score = 131 bits (144), Expect = 1e-26 Identities = 80/85 (94%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 413421 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGGGTCCCCTATC 413362 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||| || Sbjct 413361 ACATCTCATTTGGTTCTCGGATCCC 413337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40114982965428