Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hipposideros_20armiger_20[refseq_20GCF_5F001890085.1_202016-12-06] 7,571 sequences; 2,236,581,172 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq552 401 5e-108 seq549 269 2e-68 >seq552 Length=1099332 Score = 401 bits (444), Expect = 5e-108 Identities = 270/301 (90%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||| ||||| | |||||||| ||||||| | |||||||||||||||||||||| Sbjct 1015673 AAGAGGCAATAAATACTACGATGTGCAGCCGATGCTAAGGAAAGCATAGGAGGTTTGAAA 1015614 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct 1015613 TGGACCAGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCCACTG 1015554 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 | |||| | ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1015553 AAGAAGAT---TTTTGGGCAGAGTCAAGCATGTTGGGCCTGAAGATCACCTACTTTGCGC 1015497 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 ||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||| Sbjct 1015496 TGATGGATGGAAAGGTGTATGCCATCACAGAGTGGGCTAGATGTCAGCGTGTGGAAATCT 1015437 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 | |||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||| Sbjct 1015436 CTCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCTCGGATCCCAGGCACCA 1015377 Query 5259 G 5259 | Sbjct 1015376 G 1015376 >seq549 Length=1240072 Score = 269 bits (298), Expect = 2e-68 Identities = 158/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413664 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 413605 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct 413604 GCTGCATCCCGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTGAAGAT 413545 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 413544 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 413501 Score = 140 bits (154), Expect = 3e-29 Identities = 100/114 (88%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 413421 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGGGTCCCCTATC 413362 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 ||||| |||||||||| ||||| |||| ||||| | | || ||||| | ||| Sbjct 413361 ACATCTCATTTGGTTCTCGGATCCCAGCCACCAGTGGGC-GACAGAGGTAGGTG 413309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40207775061304