Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq674 378 6e-101 seq109 269 2e-68 >seq674 Length=1058379 Score = 378 bits (418), Expect = 6e-101 Identities = 250/279 (90%), Gaps = 10/279 (4%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 623487 ATATGCAGCCGGTGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCGAAGAGT 623428 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 623427 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGACTTCTGGGCA 623368 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||| |||||||||| |||||||| | ||| ||||||||||||||||||||| Sbjct 623367 GAGTCAAGCATGCTGGGCCTCAAGATCACCTATTCTGCACTGATGGATGGAAAGGTGTAT 623308 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGA--- 5230 || |||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 623307 GACCTCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCCAGATACCCCCAGATGC 623248 Query 5231 -------GTCCCTTGTCACATCTCATTTGGTTCACGGAT 5262 ||||| | |||||||||||||||||| | ||| Sbjct 623247 CCCCAGGGTCCCCTATCACATCTCATTTGGTTCTCAGAT 623209 >seq109 Length=2443272 Score = 269 bits (298), Expect = 2e-68 Identities = 158/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2056432 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 2056373 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 2056372 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 2056313 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 2056312 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 2056269 Score = 134 bits (148), Expect = 1e-27 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 2056188 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 2056129 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 2056128 CATCTCATTTGGTTCTCGGATTCC 2056105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40110857790948