Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq674 408 3e-110
seq109 273 2e-69
>seq674
Length=1058379
Score = 408 bits (452), Expect = 3e-110
Identities = 276/311 (89%), Gaps = 10/311 (3%)
Strand=Plus/Minus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 623507 AAGAGGCAATGAATACTATGATATGCAGCCGGTGCCAGGGAAAGCATAGGAGGTTTGAAA 623448
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623447 TGGACCGGGAACCGAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 623388
Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138
||||||| ||||| |||||||||||||||||| |||||||||| |||||||| | ||| |
Sbjct 623387 AGGAAGGAGACTTCTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATCACCTATTCTGCAC 623328
Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 623327 TGATGGATGGAAAGGTGTATGACCTCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCT 623268
Query 5199 CCCCAGATACCCACAGA----------GTCCCTTATCACATCCCATTTGGTTCACGGATG 5248
|||||||||||| |||| ||||| ||||||||| |||||||||| | |||
Sbjct 623267 CCCCAGATACCCCCAGATGCCCCCAGGGTCCCCTATCACATCTCATTTGGTTCTCAGATT 623208
Query 5249 CCAGGTACCAG 5259
|||| |||||
Sbjct 623207 GCAGGCACCAG 623197
>seq109
Length=2443272
Score = 273 bits (302), Expect = 2e-69
Identities = 159/164 (97%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056432 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 2056373
Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2056372 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 2056313
Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
|||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 2056312 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 2056269
Score = 141 bits (156), Expect = 7e-30
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2056188 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 2056129
Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
|||| |||||||||| ||||| ||||| || ||
Sbjct 2056128 CATCTCATTTGGTTCTCGGATTCCAGGCACAAG 2056096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40203640344664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |