Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq674 408 3e-110 seq109 273 2e-69 >seq674 Length=1058379 Score = 408 bits (452), Expect = 3e-110 Identities = 276/311 (89%), Gaps = 10/311 (3%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| ||||| |||| ||| |||||||||||||||||||||||||||| Sbjct 623507 AAGAGGCAATGAATACTATGATATGCAGCCGGTGCCAGGGAAAGCATAGGAGGTTTGAAA 623448 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 623447 TGGACCGGGAACCGAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 623388 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| ||||| |||||||||||||||||| |||||||||| |||||||| | ||| | Sbjct 623387 AGGAAGGAGACTTCTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATCACCTATTCTGCAC 623328 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 623327 TGATGGATGGAAAGGTGTATGACCTCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCT 623268 Query 5199 CCCCAGATACCCACAGA----------GTCCCTTATCACATCCCATTTGGTTCACGGATG 5248 |||||||||||| |||| ||||| ||||||||| |||||||||| | ||| Sbjct 623267 CCCCAGATACCCCCAGATGCCCCCAGGGTCCCCTATCACATCTCATTTGGTTCTCAGATT 623208 Query 5249 CCAGGTACCAG 5259 |||| ||||| Sbjct 623207 GCAGGCACCAG 623197 >seq109 Length=2443272 Score = 273 bits (302), Expect = 2e-69 Identities = 159/164 (97%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2056432 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 2056373 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 2056372 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 2056313 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 2056312 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 2056269 Score = 141 bits (156), Expect = 7e-30 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2056188 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 2056129 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||| |||||||||| ||||| ||||| || || Sbjct 2056128 CATCTCATTTGGTTCTCGGATTCCAGGCACAAG 2056096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40203640344664