Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq4195 410 1e-110
seq16590 408 3e-110
seq21535 403 1e-108
seq26173 271 6e-69
>seq4195
Length=2250183
Score = 410 bits (454), Expect = 1e-110
Identities = 254/272 (93%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
|||||||||||||||||||||||||||||||| ||||| | ||||| ||||||| |||||
Sbjct 1045189 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGATTTGAGACGGACCAGGAACCTGAGAGT 1045130
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || ||
Sbjct 1045129 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTTGGGACA 1045070
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1045069 GAGTCGAGCATGTTGCGCCTCAAGATCACCTACTTTGCGCTGATGGATAGAAAGGTGTAT 1045010
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
|| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1045009 GACATCACAGAGTGGGCTGGATGCCAGCACGTGGGAATCTCCCCAGATACCCGCAGAGTC 1044950
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|| | |||||||||||||||||||||||||||
Sbjct 1044949 CCCTATCACATCTCATTTGGTTCACGGATGCC 1044918
>seq16590
Length=5032892
Score = 408 bits (452), Expect = 3e-110
Identities = 255/273 (93%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
|||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||
Sbjct 997650 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAACGGACCAGAAACCTGAGAGT 997709
Query 5054 GCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112
|||||||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 997710 GCCAGATACTGTGCTGAGCAGTAATAGGCTGCATCCTGCTGAGGAAGGAGAACTTTGGGC 997769
Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 997770 TGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 997829
Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232
||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 997830 TGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGACTCTCCCCAGATACCCGCAGAGT 997889
Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
||| | |||||| ||||||||||||||||||||
Sbjct 997890 CCCCTATCACATTTCATTTGGTTCACGGATGCC 997922
>seq21535
Length=1590287
Score = 403 bits (446), Expect = 1e-108
Identities = 254/273 (93%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGC-ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5052
||||||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||
Sbjct 1012659 ATGTGCAGCTGATGCCAGGGAAAGCCATAGGAGGTTTGAAATGGAGCAGTAACCTAAGAG 1012718
Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1012719 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGAATTTTGGGC 1012778
Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172
||||| |||| |||||||||||| || |||| |||||| ||||||||||||||||||||
Sbjct 1012779 TGAGTCAAGCAGGTTGGGCCTCAAGATTACCTCCTTTGCACTGATGGATGGAAAGGTGTA 1012838
Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232
||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1012839 TGACATCACAGAGTGGGCTGGATGCCAACATGTGGGAATCTCCCCAGATACCCACAGAGT 1012898
Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
||| | |||||||||||||||||||||||||||
Sbjct 1012899 CCCCTATCACATCTCATTTGGTTCACGGATGCC 1012931
>seq26173
Length=4939203
Score = 271 bits (300), Expect = 6e-69
Identities = 158/163 (97%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4049250 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 4049309
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 4049310 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 4049369
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4049370 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 4049412
Score = 145 bits (160), Expect = 6e-31
Identities = 83/85 (98%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 4049513 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 4049572
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
|||||||||||||||||||||||||
Sbjct 4049573 ACATCTCATTTGGTTCACGGATGCC 4049597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40104538240284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |