Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4195 410 1e-110 seq16590 408 3e-110 seq21535 403 1e-108 seq26173 271 6e-69 >seq4195 Length=2250183 Score = 410 bits (454), Expect = 1e-110 Identities = 254/272 (93%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||||||||||||||||||||||||| ||||| | ||||| ||||||| ||||| Sbjct 1045189 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGATTTGAGACGGACCAGGAACCTGAGAGT 1045130 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || || Sbjct 1045129 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTTGGGACA 1045070 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1045069 GAGTCGAGCATGTTGCGCCTCAAGATCACCTACTTTGCGCTGATGGATAGAAAGGTGTAT 1045010 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 1045009 GACATCACAGAGTGGGCTGGATGCCAGCACGTGGGAATCTCCCCAGATACCCGCAGAGTC 1044950 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||||||||||||||| Sbjct 1044949 CCCTATCACATCTCATTTGGTTCACGGATGCC 1044918 >seq16590 Length=5032892 Score = 408 bits (452), Expect = 3e-110 Identities = 255/273 (93%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| Sbjct 997650 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAACGGACCAGAAACCTGAGAGT 997709 Query 5054 GCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| Sbjct 997710 GCCAGATACTGTGCTGAGCAGTAATAGGCTGCATCCTGCTGAGGAAGGAGAACTTTGGGC 997769 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 997770 TGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 997829 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 997830 TGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGACTCTCCCCAGATACCCGCAGAGT 997889 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | |||||| |||||||||||||||||||| Sbjct 997890 CCCCTATCACATTTCATTTGGTTCACGGATGCC 997922 >seq21535 Length=1590287 Score = 403 bits (446), Expect = 1e-108 Identities = 254/273 (93%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGC-ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5052 ||||||||| ||||||||||||||| ||||||||||||||||||| | | |||||||||| Sbjct 1012659 ATGTGCAGCTGATGCCAGGGAAAGCCATAGGAGGTTTGAAATGGAGCAGTAACCTAAGAG 1012718 Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1012719 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGAATTTTGGGC 1012778 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 ||||| |||| |||||||||||| || |||| |||||| |||||||||||||||||||| Sbjct 1012779 TGAGTCAAGCAGGTTGGGCCTCAAGATTACCTCCTTTGCACTGATGGATGGAAAGGTGTA 1012838 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1012839 TGACATCACAGAGTGGGCTGGATGCCAACATGTGGGAATCTCCCCAGATACCCACAGAGT 1012898 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | ||||||||||||||||||||||||||| Sbjct 1012899 CCCCTATCACATCTCATTTGGTTCACGGATGCC 1012931 >seq26173 Length=4939203 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4049250 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 4049309 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 4049310 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 4049369 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 4049370 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 4049412 Score = 145 bits (160), Expect = 6e-31 Identities = 83/85 (98%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 4049513 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 4049572 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||||||||||| Sbjct 4049573 ACATCTCATTTGGTTCACGGATGCC 4049597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40104538240284