Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq16590 443 2e-120 seq21535 441 6e-120 seq4195 435 2e-118 seq26173 277 1e-70 >seq16590 Length=5032892 Score = 443 bits (490), Expect = 2e-120 Identities = 280/302 (93%), Gaps = 1/302 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 997630 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 997689 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCT 5077 ||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 997690 CGGACCAGAAACCTGAGAGTGCCAGATACTGTGCTGAGCAGTAATAGGCTGCATCCTGCT 997749 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 997750 GAGGAAGGAGAACTTTGGGCTGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCG 997809 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 997810 CTGATGGATGGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGACTC 997869 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct 997870 TCCCCAGATACCCGCAGAGTCCCCTATCACATTTCATTTGGTTCACGGATGCCAGGCACC 997929 Query 5258 AG 5259 || Sbjct 997930 AG 997931 >seq21535 Length=1590287 Score = 441 bits (488), Expect = 6e-120 Identities = 289/316 (91%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGC-ATAGGAGGTTTGAA 5017 |||| |||||||||| |||||||||| | ||||||||||||||| |||||||||||||| Sbjct 1012639 AAGAAGCAATGAATACAATGATGTGCAGCTGATGCCAGGGAAAGCCATAGGAGGTTTGAA 1012698 Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077 ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012699 ATGGAGCAGTAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 1012758 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| || |||||||| |||||||||| |||||||||||| || |||| |||||| Sbjct 1012759 GAGGAAGGAGAATTTTGGGCTGAGTCAAGCAGGTTGGGCCTCAAGATTACCTCCTTTGCA 1012818 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| Sbjct 1012819 CTGATGGATGGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAACATGTGGGAATC 1012878 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 1012879 TCCCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACC 1012938 Query 5258 AGCGACCAG-AGAGAG 5272 || || | | |||||| Sbjct 1012939 AGTGAGCGGCAGAGAG 1012954 >seq4195 Length=2250183 Score = 435 bits (482), Expect = 2e-118 Identities = 277/301 (92%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||| | Sbjct 1045209 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGATTTGAGA 1045150 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1045149 CGGACCAGGAACCTGAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG 1045090 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| |||||| || ||||||| ||||||||| ||||||| |||||||||||||||| Sbjct 1045089 AGGAAGGAGACTTTGGGACAGAGTCGAGCATGTTGCGCCTCAAGATCACCTACTTTGCGC 1045030 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1045029 TGATGGATAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCACGTGGGAATCT 1044970 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||| Sbjct 1044969 CCCCAGATACCCGCAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACCA 1044910 Query 5259 G 5259 | Sbjct 1044909 G 1044909 >seq26173 Length=4939203 Score = 277 bits (306), Expect = 1e-70 Identities = 159/163 (98%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4049250 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 4049309 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 4049310 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 4049369 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 4049370 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 4049412 Score = 152 bits (168), Expect = 4e-33 Identities = 103/114 (90%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4049513 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 4049572 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 ||||| ||||||||||||||||||| || ||||| | | || ||||| | ||| Sbjct 4049573 ACATCTCATTTGGTTCACGGATGCCGGGCACCAGTGGGC-GACAGAGGTAGGTG 4049625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40197306175912