Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq16590 443 2e-120
seq21535 441 6e-120
seq4195 435 2e-118
seq26173 277 1e-70
>seq16590
Length=5032892
Score = 443 bits (490), Expect = 2e-120
Identities = 280/302 (93%), Gaps = 1/302 (0%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 997630 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 997689
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCT 5077
||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 997690 CGGACCAGAAACCTGAGAGTGCCAGATACTGTGCTGAGCAGTAATAGGCTGCATCCTGCT 997749
Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137
|||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 997750 GAGGAAGGAGAACTTTGGGCTGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCG 997809
Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 997810 CTGATGGATGGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGACTC 997869
Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257
||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 997870 TCCCCAGATACCCGCAGAGTCCCCTATCACATTTCATTTGGTTCACGGATGCCAGGCACC 997929
Query 5258 AG 5259
||
Sbjct 997930 AG 997931
>seq21535
Length=1590287
Score = 441 bits (488), Expect = 6e-120
Identities = 289/316 (91%), Gaps = 2/316 (1%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGC-ATAGGAGGTTTGAA 5017
|||| |||||||||| |||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 1012639 AAGAAGCAATGAATACAATGATGTGCAGCTGATGCCAGGGAAAGCCATAGGAGGTTTGAA 1012698
Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012699 ATGGAGCAGTAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 1012758
Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137
|||||||| || |||||||| |||||||||| |||||||||||| || |||| ||||||
Sbjct 1012759 GAGGAAGGAGAATTTTGGGCTGAGTCAAGCAGGTTGGGCCTCAAGATTACCTCCTTTGCA 1012818
Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197
||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct 1012819 CTGATGGATGGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAACATGTGGGAATC 1012878
Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1012879 TCCCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACC 1012938
Query 5258 AGCGACCAG-AGAGAG 5272
|| || | | ||||||
Sbjct 1012939 AGTGAGCGGCAGAGAG 1012954
>seq4195
Length=2250183
Score = 435 bits (482), Expect = 2e-118
Identities = 277/301 (92%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 1045209 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGATTTGAGA 1045150
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078
||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1045149 CGGACCAGGAACCTGAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG 1045090
Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138
||||||| |||||| || ||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1045089 AGGAAGGAGACTTTGGGACAGAGTCGAGCATGTTGCGCCTCAAGATCACCTACTTTGCGC 1045030
Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198
|||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1045029 TGATGGATAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCACGTGGGAATCT 1044970
Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258
|||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct 1044969 CCCCAGATACCCGCAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACCA 1044910
Query 5259 G 5259
|
Sbjct 1044909 G 1044909
>seq26173
Length=4939203
Score = 277 bits (306), Expect = 1e-70
Identities = 159/163 (98%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4049250 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 4049309
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 4049310 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 4049369
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4049370 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 4049412
Score = 152 bits (168), Expect = 4e-33
Identities = 103/114 (90%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4049513 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 4049572
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279
||||| ||||||||||||||||||| || ||||| | | || ||||| | |||
Sbjct 4049573 ACATCTCATTTGGTTCACGGATGCCGGGCACCAGTGGGC-GACAGAGGTAGGTG 4049625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40197306175912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |