Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq20 437 7e-119 seq39 223 3e-54 seq2 192 5e-45 >seq20 Length=45853754 Score = 437 bits (484), Expect = 7e-119 Identities = 260/272 (96%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5935273 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5935332 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 5935333 GCCAGATACTGTGCTGAGTGTAATAAACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCA 5935392 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 5935393 GAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGCACTGATGGATGGAAAGGTGTAT 5935452 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5935453 GATATCACAGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5935512 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | |||||||||||||||||| ||||| || Sbjct 5935513 CCCTATCACATCTCATTTGGTTCTCGGATTCC 5935544 >seq39 Length=123855249 Score = 223 bits (246), Expect = 3e-54 Identities = 136/145 (94%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 5028 TTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATC 5087 ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 31761199 TTGAAATTGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATGGACTGCATC 31761258 Query 5088 CTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACT 5147 |||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| | Sbjct 31761259 YTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATT 31761318 Query 5148 TTGCGCTGATGGATGGAAAGGTGTA 5172 |||| |||||||||||||||||||| Sbjct 31761319 TTGCACTGATGGATGGAAAGGTGTA 31761343 >seq2 Length=69326197 Score = 192 bits (212), Expect = 5e-45 Identities = 117/124 (94%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 5060 TACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCG 5119 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 203494 TACTGTGCTGAGTGTAATAAACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCA 203435 Query 5120 AGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATC 5179 ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 203434 AGCATGTTGGGCCTCAAGATCACCTATTTTGCACTGATGGATGGAAAGGTGTATGATATC 203375 Query 5180 ACAG 5183 |||| Sbjct 203374 ACAG 203371 Score = 129 bits (142), Expect = 5e-26 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 203290 AGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 203231 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 203230 CATCTCATTTGGTTCTCGGATTCC 203207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40118037580404