Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq20 471 3e-129 seq39 228 7e-56 seq2 197 1e-46 >seq20 Length=45853754 Score = 471 bits (522), Expect = 3e-129 Identities = 285/301 (95%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 5935253 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5935312 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 5935313 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAAACTGCATCCTGCTG 5935372 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| | Sbjct 5935373 AGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGCAC 5935432 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 5935433 TGATGGATGGAAAGGTGTATGATATCACAGAATGGGCTGGATGCCAGCGTGTGGGAATCT 5935492 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||| Sbjct 5935493 CCCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCTCGGATTCCAGGCACCA 5935552 Query 5259 G 5259 | Sbjct 5935553 G 5935553 >seq39 Length=123855249 Score = 228 bits (252), Expect = 7e-56 Identities = 137/145 (94%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 5013 TTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATC 5072 ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 31761199 TTGAAATTGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATGGACTGCATC 31761258 Query 5073 CTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACT 5132 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 31761259 YTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATT 31761318 Query 5133 TTGCGCTGATGGATGGAAAGGTGTA 5157 |||| |||||||||||||||||||| Sbjct 31761319 TTGCACTGATGGATGGAAAGGTGTA 31761343 >seq2 Length=69326197 Score = 197 bits (218), Expect = 1e-46 Identities = 118/124 (95%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 5045 TACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCA 5104 ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 203494 TACTGTGCTGAGTGTAATAAACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCA 203435 Query 5105 AGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATC 5164 ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 203434 AGCATGTTGGGCCTCAAGATCACCTATTTTGCACTGATGGATGGAAAGGTGTATGATATC 203375 Query 5165 ACAG 5168 |||| Sbjct 203374 ACAG 203371 Score = 141 bits (156), Expect = 7e-30 Identities = 100/113 (88%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 203290 AGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 203231 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 |||| |||||||||| ||||| ||||| ||||| | | | ||||| ||||| Sbjct 203230 CATCTCATTTGGTTCTCGGATTCCAGGCACCAGTGGGC-GGCAGAGGTATGTG 203179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210836742072