Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4916 253 2e-63 >seq4916 Length=392750 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 141050 AGGAGGTTTGAAATGGATCGGGAAGCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 141109 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||| Sbjct 141110 ATGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCCAGTATGTTGGGCCTCAAGATC 141169 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 141170 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 141212 Score = 118 bits (130), Expect = 8e-23 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||| || |||||||||||||||||||| ||||| | || Sbjct 141288 CAGAGTGGGCTGGATGCCAGCGTGTAGGCATCTCCCCAGATACCCACAGGGTCCCCTATC 141347 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| |||| || Sbjct 141348 ACATCTCATTTGGTTCTAGGATCCC 141372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40081991047560