Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq4916 253 2e-63 >seq4916 Length=392750 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 141050 AGGAGGTTTGAAATGGATCGGGAAGCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 141109 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||| Sbjct 141110 ATGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCCAGTATGTTGGGCCTCAAGATC 141169 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 141170 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 141212 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||| Sbjct 141288 CAGAGTGGGCTGGATGCCAGCGTGTAGGCATCTCCCCAGATACCCACAGGGTCCCCTATC 141347 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| |||| ||||| ||||| Sbjct 141348 ACATCTCATTTGGTTCTAGGATCCCAGGCACCAG 141381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40174706828080