Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq3642 259 4e-65 >seq3642 Length=143269 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 117107 AGGAGGTTTGAAATGGATCGGGAAGCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 117048 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||| Sbjct 117047 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCCAGTATGTTGGGCCTCAAGATC 116988 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 116987 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 116945 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||| Sbjct 116869 CAGAGTGGGCTGGATGCCAGCGTGTAGGCATCTCCCCAGATACCCACAGGGTCCCCTATC 116810 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||||| ||||| ||||| Sbjct 116809 ACATCTCATTTGGTTCTCGGATCCCAGGCACCAG 116776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40169232173728