Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaderma_20lyra_20[genbank_20GCA_5F000465345.1_202013-09-14] 192,872 sequences; 1,735,931,796 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq58810 251 6e-63 >seq58810 Length=7929 Score = 251 bits (278), Expect = 6e-63 Identities = 154/164 (94%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6062 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 6121 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || || Sbjct 6122 GCTGCATCCCGCTGAAGAAGGCGACTTTTGGGCAGAGTCAAGTATGTTGGGCCTGAAGAT 6181 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || || ||||||||||||||||||||||||||||| ||||||| Sbjct 6182 TACGTATTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 6225 Score = 134 bits (148), Expect = 1e-27 Identities = 99/114 (87%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 6305 CAGAATGGGCTGGATGCCAACGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 6364 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 ||||| |||||||||| ||||| ||||| |||| | | || ||||| | ||| Sbjct 6365 ACATCTCATTTGGTTCTCGGATCCCAGGCGCCAGTGGGC-GACAGAGGTAGGTG 6417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40123949336128