Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq101746 223 3e-54 >seq101746 Length=1313915 Score = 223 bits (246), Expect = 3e-54 Identities = 155/180 (86%), Gaps = 17/180 (9%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347780 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 347721 Query 5081 CTGCATCCTGCTG-----------------AGGAAGGTGACTTTTGGGCAGAGTCGAGCA 5123 ||||||||||||| | ||||| ||||||||||||||||| || | Sbjct 347720 CTGCATCCTGCTGNNNNNNNNNNNCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGTA 347661 Query 5124 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 347660 TGTTGGGCCTTAAGATCACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 347601 Score = 113 bits (124), Expect = 4e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| ||||| || ||||||||||||||||| || |||||||| | || Sbjct 347525 CAGAGTGGGCTGGATGTCAGCGAGTAGGAATCTCCCCAGATACTCATAGAGTCCCCTATC 347466 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||| || Sbjct 347465 ACATCTCATTTGGTTCTCGGATACC 347441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40072468393692