Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myotis_20davidii_20[refseq_20GCF_5F000327345.1_202012-12-20] 101,769 sequences; 2,059,799,708 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq101746 228 7e-56 >seq101746 Length=1313915 Score = 228 bits (252), Expect = 7e-56 Identities = 156/180 (87%), Gaps = 17/180 (9%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347780 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 347721 Query 5066 CTGCATCCTGCTG-----------------AGGAAGGTGACTTTTGGGCAGAGTCAAGCA 5108 ||||||||||||| | ||||| |||||||||||||||||||| | Sbjct 347720 CTGCATCCTGCTGNNNNNNNNNNNCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGTA 347661 Query 5109 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 347660 TGTTGGGCCTTAAGATCACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 347601 Score = 125 bits (138), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| ||||| || ||||||||||||||||| || |||||||| |||| Sbjct 347525 CAGAGTGGGCTGGATGTCAGCGAGTAGGAATCTCCCCAGATACTCATAGAGTCCCCTATC 347466 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 ||||| |||||||||| ||||| ||||| ||||| | | || ||||| | ||| Sbjct 347465 ACATCTCATTTGGTTCTCGGATACCAGGCACCAGTGGGC-GACAGAGGTAGGTG 347413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40165162146856