Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq7786 369 3e-98 seq7781 269 2e-68 >seq7786 Length=83011774 Score = 369 bits (408), Expect = 3e-98 Identities = 248/279 (89%), Gaps = 10/279 (4%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 48058145 ATGAGCAGCCGGTGCCAGGGAAAGCATAGGAGGTTTGAAATGTACCGGGAACCTAAGAGT 48058204 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| Sbjct 48058205 GCCAGATACTGTGCTGAGTGTAATAGGCTGAATCCTGCTGAGGAAGGAGACTTCTGGGCA 48058264 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| |||||||| | ||| ||||||||||||||||||||| Sbjct 48058265 GAGTCAAGCATGTTGGGCCTCAAGATCACCTATTCTGCACTGATGGATGGAAAGGTGTAT 48058324 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT----------CCCCAGATAC 5223 || |||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 48058325 GACCTCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCCAGACACCCCCAGATGC 48058384 Query 5224 CCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGAT 5262 || ||||| ||| | |||||||||||||||||| | ||| Sbjct 48058385 CCCCAGAGCCCCCTATCACATCTCATTTGGTTCTCAGAT 48058423 >seq7781 Length=3670399 Score = 269 bits (298), Expect = 2e-68 Identities = 158/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282860 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 282801 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 282800 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 282741 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 282740 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 282697 Score = 134 bits (148), Expect = 1e-27 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 282616 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 282557 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 282556 CATCTCATTTGGTTCTCGGATTCC 282533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40114847114496