Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq7786 399 2e-107 seq7781 273 2e-69 >seq7786 Length=83011774 Score = 399 bits (442), Expect = 2e-107 Identities = 274/311 (88%), Gaps = 10/311 (3%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||| ||| ||| |||||||||||||||||||||||||||| Sbjct 48058125 AAGAGGCAATGAATACTATGATGAGCAGCCGGTGCCAGGGAAAGCATAGGAGGTTTGAAA 48058184 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 48058185 TGTACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGAATCCTGCTG 48058244 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| ||||| ||||||||||||||||||||||||||||| |||||||| | ||| | Sbjct 48058245 AGGAAGGAGACTTCTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATTCTGCAC 48058304 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 48058305 TGATGGATGGAAAGGTGTATGACCTCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCT 48058364 Query 5199 ----------CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATG 5248 |||||||| ||| ||||| ||| ||||||||| |||||||||| | ||| Sbjct 48058365 CCCCAGACACCCCCAGATGCCCCCAGAGCCCCCTATCACATCTCATTTGGTTCTCAGATT 48058424 Query 5249 CCAGGTACCAG 5259 |||| ||||| Sbjct 48058425 GCAGGCACCAG 48058435 >seq7781 Length=3670399 Score = 273 bits (302), Expect = 2e-69 Identities = 159/164 (97%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282860 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 282801 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 282800 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 282741 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 282740 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 282697 Score = 141 bits (156), Expect = 7e-30 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 282616 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 282557 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||| |||||||||| ||||| ||||| || || Sbjct 282556 CATCTCATTTGGTTCTCGGATTCCAGGCACAAG 282524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40207638896128