Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq7786 399 2e-107
seq7781 273 2e-69
>seq7786
Length=83011774
Score = 399 bits (442), Expect = 2e-107
Identities = 274/311 (88%), Gaps = 10/311 (3%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 48058125 AAGAGGCAATGAATACTATGATGAGCAGCCGGTGCCAGGGAAAGCATAGGAGGTTTGAAA 48058184
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 48058185 TGTACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGAATCCTGCTG 48058244
Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138
||||||| ||||| ||||||||||||||||||||||||||||| |||||||| | ||| |
Sbjct 48058245 AGGAAGGAGACTTCTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATTCTGCAC 48058304
Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 48058305 TGATGGATGGAAAGGTGTATGACCTCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCT 48058364
Query 5199 ----------CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATG 5248
|||||||| ||| ||||| ||| ||||||||| |||||||||| | |||
Sbjct 48058365 CCCCAGACACCCCCAGATGCCCCCAGAGCCCCCTATCACATCTCATTTGGTTCTCAGATT 48058424
Query 5249 CCAGGTACCAG 5259
|||| |||||
Sbjct 48058425 GCAGGCACCAG 48058435
>seq7781
Length=3670399
Score = 273 bits (302), Expect = 2e-69
Identities = 159/164 (97%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282860 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 282801
Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 282800 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 282741
Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
|||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 282740 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 282697
Score = 141 bits (156), Expect = 7e-30
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 282616 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 282557
Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
|||| |||||||||| ||||| ||||| || ||
Sbjct 282556 CATCTCATTTGGTTCTCGGATTCCAGGCACAAG 282524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40207638896128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |