Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq158 342 4e-90 seq147 264 9e-67 >seq158 Length=7371824 Score = 342 bits (378), Expect = 4e-90 Identities = 240/277 (87%), Gaps = 19/277 (7%) Strand=Plus/Minus Query 4996 GTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGC 5055 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3536156 GTGCAGCCGGTGCCAGGGCAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGC 3536097 Query 5056 CAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGA 5115 ||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct 3536096 CAGATACTGCGCTGAGTGTAATAGACTGCATCCTGCTGAGGAAGGAGACTTCTGGGCAGA 3536037 Query 5116 GTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGA 5175 ||| ||||||||||||||||| |||||||| | ||| |||||||||||||||| Sbjct 3536036 GTCAAGCATGTTGGGCCTCAAGATCACCTATTCTGCACTGATGGATGGAAAGG------- 3535984 Query 5176 TATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCC---------- 5225 |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3535983 --TCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCCAGATACCCCCAGATACCT 3535926 Query 5226 ACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGAT 5262 ||||||||| | |||||||||||| ||||| |||| Sbjct 3535925 CCAGAGTCCCCTATCACATCTCATTCGGTTCTTGGAT 3535889 >seq147 Length=2793004 Score = 264 bits (292), Expect = 9e-67 Identities = 157/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 365364 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAAGAG 365305 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 365304 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 365245 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 365244 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 365201 Score = 134 bits (148), Expect = 1e-27 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 365120 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 365061 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 365060 CATCTCATTTGGTTCTCGGATTCC 365037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116642964524