Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq9166 268 7e-68 >seq9166 Length=194375 Score = 268 bits (296), Expect = 7e-68 Identities = 157/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165740 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 165681 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 165680 CTGCACCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 165621 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| |||||||||| || |||||||||||||||| Sbjct 165620 ACCTACTTTGCAATGATGGATGGGAAAGTGTATGATATCACAG 165578 Score = 136 bits (150), Expect = 3e-28 Identities = 81/85 (95%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 165498 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGGGTCCCTTATC 165439 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||| || |||||||| Sbjct 165438 ACATCTCATTTGGCTCGCGGATGCC 165414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40110715621368