Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Okapia_20johnstoni_20[genbank_20GCA_5F001660835.1_202016-06-08] 837,179 sequences; 2,878,133,036 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq74166 109 3e-21 seq33763 109 3e-21 seq17872 105 4e-20 seq728659 98.7 6e-18 seq158694 98.7 6e-18 seq49320 98.7 6e-18 >seq74166 Length=18784 Score = 109 bits (120), Expect = 3e-21 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 17253 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 17194 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| || || || |||||||||| Sbjct 17193 CCGGCGCGG--AGGGCG-AG-ACGGGCCGGT 17167 >seq33763 Length=5759 Score = 109 bits (120), Expect = 3e-21 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 4345 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 4404 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| || || || |||||||||| Sbjct 4405 CCGGCGCGGCAGG--CG-AG-ACGGGCCGGT 4431 >seq17872 Length=21729 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| | ||| ||| |||||||||||| Sbjct 8502 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACGTGCACTCATGCTCCACCTCC 8561 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 8562 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 8588 >seq728659 Length=461 Score = 98.7 bits (108), Expect = 6e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||||||| Sbjct 129 CTGCCCAGGCATAGTTCACCATCTTTCGGGTTCTAACACGTGCGCTCATGCTCCACCTCC 188 Query 897 CCGACGCGG 905 || ||||| Sbjct 189 CCAGCGCGG 197 >seq158694 Length=208 Score = 98.7 bits (108), Expect = 6e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | || |||| |||||||||||| Sbjct 124 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGTGCTCATGCTCCACCTCC 65 Query 897 CCGACGCGG 905 || ||||| Sbjct 64 CCAGCGCGG 56 >seq49320 Length=25279 Score = 98.7 bits (108), Expect = 6e-18 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| Sbjct 13213 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCAAGCTCCACCTCC 13272 Query 897 CCGACGC 903 ||| ||| Sbjct 13273 CCGGCGC 13279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2836101545142