Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq59 399 2e-107 seq227 390 9e-105 seq32 370 8e-99 seq61 268 7e-68 >seq59 Length=12930228 Score = 399 bits (442), Expect = 2e-107 Identities = 253/273 (93%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAG-CATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5052 ||||||||| || ||||||||||| ||| |||||||||||||||| ||||||||| |||| Sbjct 12901214 ATGTGCAGCTGACGCCAGGGAAAGACATGGGAGGTTTGAAATGGAACGGGAACCTGAGAG 12901273 Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 ||||||| || ||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 12901274 TGCCAGACACCGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGAATTTGGGGC 12901333 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 12901334 TGAGTCAAGCAGGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 12901393 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 12901394 TGACATCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCAAGATACCCACAGAGT 12901453 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | ||||||||||||||||||||||||||| Sbjct 12901454 CCCCTATCACATCTCATTTGGTTCACGGATGCC 12901486 >seq227 Length=3229813 Score = 390 bits (432), Expect = 9e-105 Identities = 249/271 (92%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 4995 TGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTG 5054 ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| Sbjct 817412 TGTGCAGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAACGGACCAGGAACCTGAGAGTT 817353 Query 5055 CCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAG 5114 |||| ||||| ||||||||||| |||||||||||||||||||||| |||||| |||||| Sbjct 817352 CCAGGTACTGCGCTGAGTGTAACGGGCTGCATCCTGCTGAGGAAGGAGACTTTGGGGCAG 817293 Query 5115 AGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATG 5174 |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| Sbjct 817292 AGTCGAGCATGTTGGGCCTCAAGATCACCTGCTTTGCGCTGATGGATAGAAAGGTGTATG 817233 Query 5175 ATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCC 5234 | ||||||||||||||||||||||||| ||||||||||| ||||||||||| | | |||| Sbjct 817232 ACATCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCTTCCCAGATACCCGCCGGGTCC 817173 Query 5235 CTTGTCACATCTCATTTGGTTCACGGATGCC 5265 | | ||||||||||||||||||||||||||| Sbjct 817172 CCTATCACATCTCATTTGGTTCACGGATGCC 817142 >seq32 Length=15399534 Score = 370 bits (410), Expect = 8e-99 Identities = 245/272 (90%), Gaps = 11/272 (4%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||||| ||||||||| |||||||||| ||||||||||||| ||||||| ||||| Sbjct 1004312 ATGTGCAGCCGTTGCCAGGGAGAGCATAGGAG-TTTGAAATGGACCAGGAACCTGAGAGT 1004370 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||| ||||||||||||| ||||||||||||||||||||||| | |||| ||||| Sbjct 1004371 GCCAGATACCGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGGCTTTGGGGCA 1004430 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||||||||| | ||||||||||||||||||||||||||||| |||||| Sbjct 1004431 ----------TGTTGGGCCTCGAGATCACCTACTTTGCGCTGATGGATGGAAATGTGTAT 1004480 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1004481 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCGCAGAGTC 1004540 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||||||||||||||| Sbjct 1004541 CCCTATCACATCTCATTTGGTTCACGGATGCC 1004572 >seq61 Length=12256116 Score = 268 bits (296), Expect = 7e-68 Identities = 157/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 861836 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 861895 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 861896 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 861955 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 861956 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 861998 Score = 145 bits (160), Expect = 6e-31 Identities = 83/85 (98%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 862099 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 862158 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||||||||||| Sbjct 862159 ACATCTCATTTGGTTCACGGATGCC 862183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117647178224