Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orcinus_20orca_20[refseq_20GCF_5F000331955.2_202013-01-31] 1,668 sequences; 2,372,919,875 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq59 428 4e-116 seq227 408 3e-110 seq32 399 2e-107 seq61 271 6e-69 >seq59 Length=12930228 Score = 428 bits (474), Expect = 4e-116 Identities = 286/316 (91%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAG-CATAGGAGGTTTGAA 5017 |||| || ||||||| || ||||||| | || ||||||||||| ||| ||||||||||| Sbjct 12901194 AAGAAGCAGTGAATACTATCATGTGCAGCTGACGCCAGGGAAAGACATGGGAGGTTTGAA 12901253 Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077 ||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct 12901254 ATGGAACGGGAACCTGAGAGTGCCAGACACCGTGCTGAGTGTAATAGGCTGCATCCTGCT 12901313 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| || ||| |||| |||||||||| |||||||||||| ||||||||||||||| Sbjct 12901314 GAGGAAGGAGAATTTGGGGCTGAGTCAAGCAGGTTGGGCCTCAAGATCACCTACTTTGCG 12901373 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 12901374 CTGATGGATGGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCATGTGGGAATC 12901433 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 |||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| || Sbjct 12901434 TCCCAAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCGCC 12901493 Query 5258 AGCGACCAG-AGAGAG 5272 || || ||| |||||| Sbjct 12901494 AGTGAGCAGCAGAGAG 12901509 >seq227 Length=3229813 Score = 408 bits (452), Expect = 3e-110 Identities = 271/301 (90%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| || |||||| |||||||||||||||||| ||||||||||||| Sbjct 817433 AAGAAGCAATGAATACTGTGGTGTGCAGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAA 817374 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||| ||||||| ||||| |||| ||||| ||||||||||| ||||||||||||||| Sbjct 817373 CGGACCAGGAACCTGAGAGTTCCAGGTACTGCGCTGAGTGTAACGGGCTGCATCCTGCTG 817314 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| |||||| |||||||||| ||||||||||||||||| ||||||| |||||||| Sbjct 817313 AGGAAGGAGACTTTGGGGCAGAGTCGAGCATGTTGGGCCTCAAGATCACCTGCTTTGCGC 817254 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 817253 TGATGGATAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCATGTGGGAATCT 817194 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 ||||||||||| | | ||||| ||||||||| |||||||||||||||||||||| |||| Sbjct 817193 TCCCAGATACCCGCCGGGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACCA 817134 Query 5259 G 5259 | Sbjct 817133 G 817133 >seq32 Length=15399534 Score = 399 bits (442), Expect = 2e-107 Identities = 269/301 (89%), Gaps = 11/301 (4%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| ||| ||||||||| |||||||||| ||||||| Sbjct 1004292 AAGAAGCAATGAATACTATGATGTGCAGCCGTTGCCAGGGAGAGCATAGGAG-TTTGAAA 1004350 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 |||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1004351 TGGACCAGGAACCTGAGAGTGCCAGATACCGTGCTGAGTGTAACAGGCTGCATCCTGCTG 1004410 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| | |||| ||||| ||||||||||| | |||||||||||||||| Sbjct 1004411 AGGAAGGAGGCTTTGGGGCA----------TGTTGGGCCTCGAGATCACCTACTTTGCGC 1004460 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1004461 TGATGGATGGAAATGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 1004520 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||| Sbjct 1004521 CCCCAGATACCCGCAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACCA 1004580 Query 5259 G 5259 | Sbjct 1004581 G 1004581 >seq61 Length=12256116 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 861836 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 861895 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 861896 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 861955 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 861956 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 861998 Score = 156 bits (172), Expect = 3e-34 Identities = 91/94 (97%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 862099 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 862158 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||||||||||||||| ||||| Sbjct 862159 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 862192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210445436832