Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq1 468 4e-128
seq10001 286 3e-73
>seq1
Length=7560343
Score = 468 bits (518), Expect = 4e-128
Identities = 267/272 (98%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 395610 ATGTGCAGCCGATGCCAGGGAAGGCATAGGAGGTTCGAAATGGACCGGGAACCTAAGAGT 395669
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395670 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 395729
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395730 GAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 395789
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 395790 GATATCACAGAGTGGGCTGGATGCCAGCGTGTAGGAATCTCCCCAGATACCCACAGAGTC 395849
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|||| |||||||||||||||||||||||||||
Sbjct 395850 CCTTATCACATCTCATTTGGTTCACGGATGCC 395881
>seq10001
Length=1812816
Score = 286 bits (316), Expect = 3e-73
Identities = 161/163 (99%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360853 AGGAGGTTCGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 360912
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360913 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 360972
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 360973 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 361015
Score = 149 bits (164), Expect = 5e-32
Identities = 84/85 (99%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361094 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 361153
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
|||||||||||||||||||||||||
Sbjct 361154 ACATCTCATTTGGTTCACGGATGCC 361178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40111603391412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |