Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28]
15,059 sequences; 2,696,886,330 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq1 502 2e-138
seq10001 289 2e-74
>seq1
Length=7560343
Score = 502 bits (556), Expect = 2e-138
Identities = 292/301 (97%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| |||||||||| |||||||||||||| |||||||||||| ||||
Sbjct 395590 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAGGCATAGGAGGTTCGAAA 395649
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395650 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 395709
Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395710 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 395769
Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 395770 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTAGGAATCT 395829
Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 395830 CCCCAGATACCCACAGAGTCCCTTATCACATCTCATTTGGTTCACGGATGCCAGGCACCA 395889
Query 5259 G 5259
|
Sbjct 395890 G 395890
>seq10001
Length=1812816
Score = 289 bits (320), Expect = 2e-74
Identities = 162/163 (99%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360853 AGGAGGTTCGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 360912
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360913 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 360972
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 360973 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 361015
Score = 161 bits (178), Expect = 8e-36
Identities = 92/94 (98%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361094 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 361153
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
||||| |||||||||||||||||||||| |||||
Sbjct 361154 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 361187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40204387669816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |