Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantholops_20hodgsonii_20[refseq_20GCF_5F000400835.1_202013-05-28] 15,059 sequences; 2,696,886,330 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1 502 2e-138 seq10001 289 2e-74 >seq1 Length=7560343 Score = 502 bits (556), Expect = 2e-138 Identities = 292/301 (97%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||| |||||||||||| |||| Sbjct 395590 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAGGCATAGGAGGTTCGAAA 395649 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395650 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 395709 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395710 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 395769 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 395770 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTAGGAATCT 395829 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 395830 CCCCAGATACCCACAGAGTCCCTTATCACATCTCATTTGGTTCACGGATGCCAGGCACCA 395889 Query 5259 G 5259 | Sbjct 395890 G 395890 >seq10001 Length=1812816 Score = 289 bits (320), Expect = 2e-74 Identities = 162/163 (99%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360853 AGGAGGTTCGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 360912 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360913 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 360972 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 360973 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 361015 Score = 161 bits (178), Expect = 8e-36 Identities = 92/94 (98%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361094 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 361153 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||||||||||||||| ||||| Sbjct 361154 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 361187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40204387669816