Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq377 432 3e-117 seq2036 430 1e-116 seq11382 259 4e-65 >seq377 Length=583726 Score = 432 bits (478), Expect = 3e-117 Identities = 259/272 (95%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 574933 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAACGGACCGGGAACCTGAGAGT 574992 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| Sbjct 574993 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTTGGGGCA 575052 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 |||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 575053 GAGTTGAGCATGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGATAGAAAGGTGTAT 575112 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 575113 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCGCAGAGTC 575172 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||||||||| ||||| Sbjct 575173 CCCTATCACATCTCATTTGGTTCACGTATGCC 575204 >seq2036 Length=292679 Score = 430 bits (476), Expect = 1e-116 Identities = 260/273 (95%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 218848 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCAGGAACCTGAGAGT 218789 Query 5054 GCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 218788 GCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGC 218729 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| | Sbjct 218728 AGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGATGAAAAGGTGCA 218669 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 218668 TGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCGCAGAGT 218609 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | ||||||||||||||||||| ||||||| Sbjct 218608 CCCCTATCACATCTCATTTGGTTCATGGATGCC 218576 >seq11382 Length=2087996 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 32683 AGGAGGTTTGAGATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 32742 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 32743 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 32802 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 32803 ACCTACTTTGCCCTGATGGATGGAAAGGTGTATGACATCACAG 32845 Score = 145 bits (160), Expect = 6e-31 Identities = 83/85 (98%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 32946 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 33005 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||||||||||| Sbjct 33006 ACATCTCATTTGGTTCACGGATGCC 33030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40113114450948