Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physeter_20catodon_20[refseq_20GCF_5F000472045.1_202013-09-30] 11,711 sequences; 2,280,727,784 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq2036 464 5e-127 seq377 453 9e-124 seq11382 262 3e-66 >seq2036 Length=292679 Score = 464 bits (514), Expect = 5e-127 Identities = 285/302 (94%), Gaps = 1/302 (0%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 218868 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 218809 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCT 5077 |||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 218808 TGGACCAGGAACCTGAGAGTGCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCT 218749 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 218748 GAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCG 218689 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 218688 CTGATGGATGAAAAGGTGCATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 218629 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||||| ||| Sbjct 218628 TCCCCAGATACCCGCAGAGTCCCCTATCACATCTCATTTGGTTCATGGATGCCAGGCACC 218569 Query 5258 AG 5259 || Sbjct 218568 AG 218567 >seq377 Length=583726 Score = 453 bits (502), Expect = 9e-124 Identities = 281/301 (93%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 574913 AAGAAGCAATGAATACCATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 574972 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 574973 CGGACCGGGAACCTGAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG 575032 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 575033 AGGAAGGAGACTTTGGGGCAGAGTTGAGCATGTTGGGCCTCAAGATCACCTACTTTGCGC 575092 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 575093 TGATGGATAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 575152 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||| || | Sbjct 575153 CCCCAGATACCCGCAGAGTCCCCTATCACATCTCATTTGGTTCACGTATGCCAGGCACGA 575212 Query 5259 G 5259 | Sbjct 575213 G 575213 >seq11382 Length=2087996 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 32683 AGGAGGTTTGAGATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 32742 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 32743 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 32802 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 32803 ACCTACTTTGCCCTGATGGATGGAAAGGTGTATGACATCACAG 32845 Score = 156 bits (172), Expect = 3e-34 Identities = 91/94 (97%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 32946 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 33005 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||||||||||||||| ||||| Sbjct 33006 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 33039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40205902224664