Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20alecto_20[refseq_20GCF_5F000325575.1_202013-12-04] 65,598 sequences; 1,985,975,446 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4936 253 2e-63 >seq4936 Length=2898946 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 151812 AGGAGGTTTGAAATGGACCGAGAGCCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 151753 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 151752 CTGCACCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 151693 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 151692 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 151650 Score = 134 bits (148), Expect = 1e-27 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 151570 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 151511 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 151510 CATCTCATTTGGTTCTCGGATCCC 151487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40088793523464