Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq276 259 4e-65 >seq276 Length=3268059 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 1080032 AGGAGGTTTGAAATGGACCGAGAGCCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 1080091 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1080092 CTGCACCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 1080151 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1080152 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 1080194 Score = 147 bits (162), Expect = 2e-31 Identities = 101/113 (89%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1080274 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 1080333 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 |||| |||||||||| ||||| ||||| ||||| | | || ||||| | ||| Sbjct 1080334 CATCTCATTTGGTTCTCGGATCCCAGGCACCAGTGGGC-GACAGAGGTAGGTG 1080385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40194871940656