Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq60497 269 2e-68
>seq60497
Length=23229
Score = 269 bits (298), Expect = 2e-68
Identities = 158/164 (96%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16321 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 16262
Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124
||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 16261 GCTGCATCCCGCTGAAGAAGGAGACTTTTGGGCAGAGTCTAGCATGTTGGGCCTGAAAAT 16202
Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct 16201 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 16158
Score = 147 bits (162), Expect = 2e-31
Identities = 89/94 (95%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 16078 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 16019
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
||||| |||||||||| ||||| ||||| |||||
Sbjct 16018 ACATCTCATTTGGTTCTCGGATCCCAGGCACCAG 15985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40138593652000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |