Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq183 269 2e-68 >seq183 Length=3474883 Score = 269 bits (298), Expect = 2e-68 Identities = 158/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238638 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 238579 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 238578 GCTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCTAGCATGTTGGGCCTGAAAAT 238519 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 238518 CACCTATTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 238475 Score = 127 bits (140), Expect = 2e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||| || |||||||| | || Sbjct 238395 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACTCATAGAGTCCCCTATC 238336 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||| || Sbjct 238335 ACATCTCATTTGGTTCTCGGATCCC 238311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40089767949252