Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq183 269 2e-68
>seq183
Length=3474883
Score = 269 bits (298), Expect = 2e-68
Identities = 158/164 (96%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238638 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 238579
Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 238578 GCTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCTAGCATGTTGGGCCTGAAAAT 238519
Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
|||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 238518 CACCTATTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 238475
Score = 127 bits (140), Expect = 2e-25
Identities = 79/85 (93%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||
Sbjct 238395 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACTCATAGAGTCCCCTATC 238336
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
|||||||||||||||| ||||| ||
Sbjct 238335 ACATCTCATTTGGTTCTCGGATCCC 238311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40089767949252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |