Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4 241 1e-59 >seq4 Length=51989874 Score = 241 bits (266), Expect = 1e-59 Identities = 151/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 8492864 AGGAGGTTTGAAATGGACCGGGAAGCAAAGAGTGCCAGATACTGTGCTGAGTGTAATAAG 8492805 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||| || ||||||||||||||||| |||||||| || ||||| ||| Sbjct 8492804 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGTTTGGTCTCAAGATC 8492745 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||| |||||||||||||||||||||||||||||| Sbjct 8492744 ACGTACTTTGCATTGATGGATGGAAAGGTGTATGATATCACAG 8492702 Score = 122 bits (134), Expect = 7e-24 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | || Sbjct 8492090 CAGAGTGGGCGGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTCCCCTATC 8492031 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 8492030 ACATCTCATTTGGTTCTCGG 8492011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40112602640460