Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sorex_20araneus_20[refseq_20GCF_5F000181275.1_202012-08-27] 12,845 sequences; 2,423,158,183 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq4 244 9e-61 >seq4 Length=51989874 Score = 244 bits (270), Expect = 9e-61 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 8492864 AGGAGGTTTGAAATGGACCGGGAAGCAAAGAGTGCCAGATACTGTGCTGAGTGTAATAAG 8492805 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||| || |||||||||||||||||||||||||| || ||||| ||| Sbjct 8492804 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGTTTGGTCTCAAGATC 8492745 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||| |||||||||||||||||||||||||||||| Sbjct 8492744 ACGTACTTTGCATTGATGGATGGAAAGGTGTATGATATCACAG 8492702 Score = 136 bits (150), Expect = 3e-28 Identities = 103/120 (86%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 8492090 CAGAGTGGGCGGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTCCCCTATC 8492031 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTGAGGGTT 5285 ||||| |||||||||| ||| | ||||| ||||| | | | ||||| | |||| |||| Sbjct 8492030 ACATCTCATTTGGTTCTCGGCTCCCAGGCACCAGTGGGC-GGCAGAGGTAGGTGACGGTT 8491972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40205389230280