Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq5 253 2e-63 >seq5 Length=104526007 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 21266736 AGGAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAAGAGG 21266677 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||| ||| Sbjct 21266676 CTGCATCCCGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTTGGCCTCAAGATC 21266617 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 21266616 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 21266574 Score = 122 bits (134), Expect = 7e-24 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| | || Sbjct 21266493 CAGAGTGGGCTGGATGCCAGCGTGTGGGGATATCCCCAGATACTCACAGAGTCCCCTATC 21266434 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||||| Sbjct 21266433 ACATCTCATTTGGTTCGAGGATGCC 21266409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40118123333484