Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq5 259 4e-65 >seq5 Length=104526007 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 21266736 AGGAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAAGAGG 21266677 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 21266676 CTGCATCCCGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTTGGCCTCAAGATC 21266617 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 21266616 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 21266574 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct 21266493 CAGAGTGGGCTGGATGCCAGCGTGTGGGGATATCCCCAGATACTCACAGAGTCCCCTATC 21266434 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| |||||||||| ||||| Sbjct 21266433 ACATCTCATTTGGTTCGAGGATGCCAGGCACCAG 21266400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210922693512