Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq352 114 7e-23 seq156 114 7e-23 >seq352 Length=51932 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 1415 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 1474 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1475 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1501 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 49591 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 49532 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 49531 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 49505 >seq156 Length=16266 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| Sbjct 13214 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 13155 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 13154 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 13128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860781915274