Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq29 262 3e-66 >seq29 Length=18482212 Score = 262 bits (290), Expect = 3e-66 Identities = 157/165 (95%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 5019 ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATA 5078 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 221027 ATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAATA 220968 Query 5079 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAA 5138 | |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 220967 GACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGTATGTTGGGCCTCAAAA 220908 Query 5139 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 220907 TCACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 220863 Score = 116 bits (128), Expect = 3e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 ||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| | ||| Sbjct 220782 AGAATGGGCTGGATGTCAGCGTGTGGGGATCTCTCCAGATACCCACAGAGTCCCCTATCA 220723 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 220722 CATCTCATTTGGTTCTCGGATTCC 220699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40107649723092