Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq29 266 3e-67 >seq29 Length=18482212 Score = 266 bits (294), Expect = 3e-67 Identities = 158/165 (96%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 5004 ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATA 5063 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 221027 ATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAATA 220968 Query 5064 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAA 5123 | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 220967 GACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGTATGTTGGGCCTCAAAA 220908 Query 5124 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 220907 TCACCTATTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 220863 Score = 127 bits (140), Expect = 2e-25 Identities = 84/93 (90%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 ||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 220782 AGAATGGGCTGGATGTCAGCGTGTGGGGATCTCTCCAGATACCCACAGAGTCCCCTATCA 220723 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||| |||||||||| ||||| ||||| ||||| Sbjct 220722 CATCTCATTTGGTTCTCGGATTCCAGGCACCAG 220690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40200424856056