Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001608.3 Length=19111 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 3e-12 >seq3 Length=527952102 Score = 84.2 bits (92), Expect = 3e-12 Identities = 183/275 (67%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 13389 GAGAAATACAACCTCGCCTTCCGATATGAATTTACACGGCATTTCATAGACTACTGTAAT 13448 || ||| | || || ||||||| ||| | |||||| | || ||||| || || |||| Sbjct 99735157 GAAAAACATAATCTTGCCTTCCTTTATAAGTTTACATGCCAATTCATTGAATATGCTAAT 99735098 Query 13449 CGATGTTATGGTGTGAAGAATTTATTTGATTGGATGCATTTTTTAATACCACTATGTTAT 13508 || |||| | | ||| | ||| |||| |||||||| |||||||| | |||| Sbjct 99735097 AAGTGCCATGGCATTATCAATCTCTTTAATTGAATGCATTTCTTAATACCTAAACATTAT 99735038 Query 13509 ATGCATGTCAGTGACTTTTATAGCCCACCACATTGTGTGACAGAAGATAATCGAAATAAC 13568 |||||| | | ||| | ||||| || | |||| |||||||| | | | || Sbjct 99735037 ATGCATATTAATGATTATTATAATCCTCTACATGC--------AAGATAATTGCAGTTAC 99734986 Query 13569 CCACCTGATTGTGCTAATGCTTATCATTATCACTTAGGAGGTATAGAGGGACTTCAGCAG 13628 |||||||| | | ||| | | |||| | | | | | |||||||||| | || Sbjct 99734985 CCACCTGAAGGCAGCAGTGCCTTTGGAGATCAAATGGAAAGAAAAGAGGGACTTTAACAT 99734926 Query 13629 AAATTGTGGACATGCATATCATGTGCCCAAATCAC 13663 ||| ||| ||| | ||| ||||||||||| || Sbjct 99734925 AAACTGTATACAAGTATAAACTGTGCCCAAATTAC 99734891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61033260018192