Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_004161.1 Length=18891 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-13 >seq3 Length=527952102 Score = 87.8 bits (96), Expect = 2e-13 Identities = 213/315 (68%), Gaps = 16/315 (5%) Strand=Plus/Minus Query 13458 AATCTTGCATTTCGCTATGAGTTCAC-TGCACCATTTATTGAGTACTGC-AACCATTGCT 13515 |||||||| || | ||| |||| || ||| | ||| ||||| || ||| || | ||| Sbjct 99735148 AATCTTGCCTTCCTTTATAAGTTTACATGC-CAATTCATTGAATA-TGCTAATAAGTGCC 99735091 Query 13516 ATGGTGTGCGTAATGTCTTTAATTGGATGCATTATTTAATCCCGCAGTGTTACATGCATG 13575 |||| | ||| |||||||||| ||||||| ||||| || | ||| |||||| Sbjct 99735090 ATGGCATTATCAATCTCTTTAATTGAATGCATTTCTTAATACCTAAACATTATATGCATA 99735031 Query 13576 TAAGTGATTATTATAATCCGCCTCA--CAATGTTAATCTTAGCAATCGAGAATATCCTCC 13633 | | ||||||||||||||| | || ||| | ||| | ||| | || || || Sbjct 99735030 TTAATGATTATTATAATCCTCTACATGCAA-GATAA---TTGCAGT------TACCCACC 99734981 Query 13634 TGAAGGCCCGAGTTCGTACCGAGGGCACTTAGGAGGCATAGAGGGATTACAACAAAAACT 13693 ||||||| ||| | | ||| || | | | | | ||||||| | |||| ||||| Sbjct 99734980 TGAAGGCAGCAGTGCCTTTGGAGATCAAATGGAAAGAAAAGAGGGACTTTAACATAAACT 99734921 Query 13694 GTGGACGAGTATATCCTGTGCACAAATCTCCTTAGTGGAAATTAAAACTGGTTTTAAGTT 13753 || || |||||| |||||| ||||| | || || ||| || ||| || ||| || Sbjct 99734920 GTATACAAGTATAAACTGTGCCCAAATTACTTTGGTTGAAGTTGAAATAGGAATTAGATT 99734861 Query 13754 ACGATCAGCGGTCAT 13768 | | ||| ||| || Sbjct 99734860 AGGCTCAATGGTTAT 99734846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60329300848432